Monday, April 13, 2009

How to determine the extinction coefficient of the PNAs in water at room temperature?

Normally, the extinction coefficient (e) could be calculated at wave length 260 nm, based on the # of base A, C, G, T in a PNA and their extinction coefficient respectively. The formula is:

e = [ 13.7 × # of A + 6.6 × # of C +11.7 × # of G + 8.6 × # of T ] mL/(µmole × cm)

If known the concentration (c) of a PNA solution, the extinction coefficient (e) could also be calculated by measuring its absorbance (A) at 260 nm. The calculation formula is:

e = A/(c × l)

note: l is the path length of the light travels through the solution

In order to get a good result, the value of absorbance (A) should be within 0.1 ~1.0 when do the measurement.

No comments: